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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3550266_3551144_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3550266 - 3551144
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGCCTTTTATTT
Flanking Amino Acid:
RELSDEIQIQVYEKLHLVTP
Intron Amino Acid Position:
1284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
50.2
0.08
1.5
65.03
40.3

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230