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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3551237_3552474_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3551237 - 3552474
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
GTGGCTTTATTT
Flanking Amino Acid:
PNSFIKLQTNRDRVASLSYR
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.2
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
82.8
0.74
0.9
88
22.6
Minor 5ss
26.1
-2.7
3
30
43
Minor BPS
53
0.17
1.7
67.82
43.9

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230