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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3552650_3556352_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3552650 - 3556352
Intron Length:
3703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTATGTTGAATT
Flanking Amino Acid:
INQTIVAAVKVYPISYLRIS
Intron Amino Acid Position:
1373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.9
0.65
1
72.2
42.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
50.2
0.09
1.9
69.07
42.5

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230