About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_355315_355492_F


Intron Information:

Intron Rank:
20

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
355315 - 355492

Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAAGCAGT

5'SS Class:
strong_major

3'SS Sequence:
CTCACCATCACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTCAC

U12 Branch Point Sequence:
TTTTCTCTCACC

Flanking Amino Acid:
KIQKKLKELGRLNTNALSLL

Intron Amino Acid Position:
1403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
90.5
0.95
0.9
81.8
38.5

Major BPS
72.7
0.56
1
75
30.1

Major PPT
68.5
0.42
0.9
61
33.6

Minor 5ss
41.1
-1
2.9
57.9
46.4

Minor BPS
59.8
0.29
2.1
78.9
36.8

Associated Gene:

Gene:
TASOR

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

327061 - 357167
30107

327061 - 362404
35344

327061 - 357167
30107