About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_355672_355757_F


Intron Information:

Intron Rank:
21

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
355672 - 355757

Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAAACCA

5'SS Class:
strong_major

3'SS Sequence:
TTTATGTATTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTTAAT

U12 Branch Point Sequence:
TGTATCTTAATA

Flanking Amino Acid:
IQQRHVVFLTEKNLKMLSNY

Intron Amino Acid Position:
1463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80
0.71
1
67.7
37.5

Major BPS
87
0.92
0.9
86.2
29.1

Major PPT
75.8
0.58
0.9
74.4
40.4

Minor 5ss
31.6
-2.1
3.1
40.3
45.3

Minor BPS
72.9
0.72
1.2
76.56
34.3

Associated Gene:

Gene:
TASOR

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

327061 - 357167
30107

327061 - 357167
30107

327061 - 362404
35344