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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_355917_362384_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
355917 - 362384
Intron Length:
6468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
CAAACCTAAAGA
Flanking Amino Acid:
PPSDVQKRQSVLYQTI*
Intron Amino Acid Position:
1516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
46.7
-0.2
2
53.96
44.2

Associated Gene:

Gene:
TASOR
Ensembl Gene ID:
ENSAPLG00000003328
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023834
327061 - 362404
35344