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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3563514_3564086_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3563514 - 3564086
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
ATCGGTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTAACTTAATG
Flanking Amino Acid:
LTDRTSAPVRHGASLFQHFL
Intron Amino Acid Position:
1797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.4
65.9
42.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.8
0.51
1
65
40.8
Minor 5ss
40.5
-1.1
2.8
44.7
43.5
Minor BPS
68.4
0.44
1.6
73.4
39

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230