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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3564183_3564311_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3564183 - 3564311
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CAATGTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACAA
Flanking Amino Acid:
LLAGTAVMIIAYHAVFSPKE
Intron Amino Acid Position:
1829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74
0.54
1
69.7
41
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
55.4
0.17
1.7
67.43
39.5

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230