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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3564396_3565443_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3564396 - 3565443
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CCCTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
PRTTPQCSPNSFPTSPVVSS
Intron Amino Acid Position:
1857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.2
43.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71
0.47
0.9
68.2
37.5
Minor 5ss
41.9
-0.9
2.9
57.8
40.7
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
NUP210
Ensembl Gene ID:
ENSAPLG00000012355
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012937
3498985 - 3566214
67230