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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3628466_3695523_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3628466 - 3695523
Intron Length:
67058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGGGG
5'SS Class:
major
3'SS Sequence:
TGTTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TGTTACTTTACA
Flanking Amino Acid:
PSPRVCLGCARSEGESSRSI
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
57.2
42
Major BPS
73
0.57
1.2
74
41.2
Major PPT
83.3
0.75
0.9
76.6
37.3
Minor 5ss
22.5
-3.2
3.3
28.7
43.7
Minor BPS
65.1
0.47
1.8
77.7
38.3

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031035
3628053 - 3966023
337971