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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_363508_363943_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
363508 - 363943
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTGAAA
5'SS Class:
major
3'SS Sequence:
TATTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATTGTTAACT
Flanking Amino Acid:
THDPQYQQLNDSYQTPRQIF
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
60.6
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
30.7
-2.2
3.3
36.4
42.7
Minor BPS
63.3
0.5
2.1
81.23
40.2

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003718
358602 - 382202
23601
ENSAPLT00000048372
359319 - 409930
50612
ENSAPLT00000037726
341599 - 382202
40604