Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_364228_364519_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

364228 - 364519

Intron Length:

292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATATGTTAACT

Flanking Amino Acid:

QLHKNNLNEERSDSPVPAVK

Intron Amino Acid Position:

758

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

75.9

35.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.72

0.9

77.3

36.1

Minor 5ss

39.6

-1.2

2.8

49.3

46.9

Minor BPS

61.2

0.43

2.1

81.58

39.8

Associated Gene:

Gene:

CCDC66

Ensembl Gene ID:

ENSAPLG00000003610

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048372

359319 - 409930

50612

ENSAPLT00000037726

341599 - 382202

40604

ENSAPLT00000003718

358602 - 382202

23601