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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_368304_370046_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
368304 - 370046
Intron Length:
1743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTCAAAT
Flanking Amino Acid:
EDMLKQKQKEELVTLKTNEI
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
71.1
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.3
0.77
0.9
86.6
24.9
Minor 5ss
38
-1.4
3.2
52.1
45.1
Minor BPS
65.6
0.57
1.6
82.48
38.2

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037726
341599 - 382202
40604
ENSAPLT00000003718
358602 - 382202
23601
ENSAPLT00000048372
359319 - 409930
50612