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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_374153_374830_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
374153 - 374830
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
EKMGTANPDKEAVPQEQPSK
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.3
0.77
0.8
81.9
34
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048372
359319 - 409930
50612
ENSAPLT00000037726
341599 - 382202
40604
ENSAPLT00000003718
358602 - 382202
23601