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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_374956_375946_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
374956 - 375946
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
GTTTTGTGCACT
Flanking Amino Acid:
FKKTRWKKELDEQVALKKKL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
71.4
0.48
1
71.8
26.7
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
45.8
-0.2
2.5
72.98
43.9

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037726
341599 - 382202
40604
ENSAPLT00000003718
358602 - 382202
23601
ENSAPLT00000048372
359319 - 409930
50612