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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_376051_376241_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
376051 - 376241
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TATCCTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTGTTATTA
Flanking Amino Acid:
ESYLQQGQKVTKESWKPADM
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
73.3
37.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.3
0.57
0.8
66.9
35.1
Minor 5ss
43.5
-0.7
2.4
51.1
38.7
Minor BPS
54
0.12
2.2
74.26
38.3

Associated Gene:

Gene:
CCDC66
Ensembl Gene ID:
ENSAPLG00000003610
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048372
359319 - 409930
50612
ENSAPLT00000037726
341599 - 382202
40604
ENSAPLT00000003718
358602 - 382202
23601