About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3811244_3916428_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3811244 - 3916428
Intron Length:
105185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
ATTGTCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCTTTTTATT
Flanking Amino Acid:
TGSSISTDPLSVEGEAPSSE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
1
62.8
43.6
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
55.6
0.26
1.6
73.31
37.6

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039597
3627020 - 3966361
339342
ENSAPLT00000032308
3704318 - 3966361
262044
ENSAPLT00000018841
3627094 - 3966361
339268