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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3916712_3920307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3916712 - 3920307
Intron Length:
3596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGAG
5'SS Class:
major
3'SS Sequence:
CACCCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TGTGTTTCACCC
Flanking Amino Acid:
ELSSDLQDKQVEMLERKYGG
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
73.5
0.53
0.8
67.2
32.2
Minor 5ss
38.2
-1.3
3.1
48.8
47.4
Minor BPS
46.3
-0.3
1.8
58.24
41.2

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031035
3628053 - 3966023
337971
ENSAPLT00000043342
3899091 - 3966361
67271
ENSAPLT00000019377
3627094 - 3966361
339268
ENSAPLT00000039597
3627020 - 3966361
339342
ENSAPLT00000018841
3627094 - 3966361
339268
ENSAPLT00000035729
3830554 - 3966361
135808
ENSAPLT00000013887
3871313 - 3966023
94711
ENSAPLT00000032308
3704318 - 3966361
262044