Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3937264_3940621_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3937264 - 3940621

Intron Length:

3358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTATCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATGTTTTTATCC

Flanking Amino Acid:

RQKQFNRDVLDCVVDEMDFS

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

84.6

33.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.4

0.62

0.8

70.6

39.9

Minor 5ss

42.9

-0.8

2.9

41.2

Minor BPS

60.1

0.3

1.6

67.69

38.4

Associated Gene:

Gene:

IQSEC1

Ensembl Gene ID:

ENSAPLG00000013323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018841

3627094 - 3966361

339268

ENSAPLT00000035729

3830554 - 3966361

135808

ENSAPLT00000013887

3871313 - 3966023

94711

ENSAPLT00000032308

3704318 - 3966361

262044

ENSAPLT00000031035

3628053 - 3966023

337971

ENSAPLT00000043342

3899091 - 3966361

67271

ENSAPLT00000019377

3627094 - 3966361

339268

ENSAPLT00000039597

3627020 - 3966361

339342