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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3940745_3941538_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3940745 - 3941538
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCTTTTCTACA
Flanking Amino Acid:
QKVERLIEAFSQRYCICNPG
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85.2
0.79
0.8
79.9
32.3
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
47.7
-0.1
1.8
59.33
40.5

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019377
3627094 - 3966361
339268
ENSAPLT00000039597
3627020 - 3966361
339342
ENSAPLT00000018841
3627094 - 3966361
339268
ENSAPLT00000035729
3830554 - 3966361
135808
ENSAPLT00000013887
3871313 - 3966023
94711
ENSAPLT00000032308
3704318 - 3966361
262044
ENSAPLT00000031035
3628053 - 3966023
337971
ENSAPLT00000043342
3899091 - 3966361
67271