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Intron Name: Anas_platyrhynchos_platyrhynchos_13_3941706_3944370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3941706 - 3944370

Intron Length:

2665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTGGGTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AATCTGATAATA

Flanking Amino Acid:

KLEDFVKNLRGVDDGEDIPR

Intron Amino Acid Position:

722

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

74.1

38.3

Major BPS

70.8

0.52

70.6

31.6

Major PPT

76.1

0.59

69.6

41.6

Minor 5ss

38.3

-1.3

2.8

40.3

45.6

Minor BPS

44.4

-0.4

2.1

57.06

35.9

Associated Gene:

Gene:

IQSEC1

Ensembl Gene ID:

ENSAPLG00000013323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019377

3627094 - 3966361

339268

ENSAPLT00000039597

3627020 - 3966361

339342

ENSAPLT00000018841

3627094 - 3966361

339268

ENSAPLT00000035729

3830554 - 3966361

135808

ENSAPLT00000013887

3871313 - 3966023

94711

ENSAPLT00000032308

3704318 - 3966361

262044

ENSAPLT00000031035

3628053 - 3966023

337971

ENSAPLT00000043342

3899091 - 3966361

67271