Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3946184_3948541_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3946184 - 3948541

Intron Length:

2358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAGGTATT

5'SS Class:

major

3'SS Sequence:

TGTATGACAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAATAT

U12 Branch Point Sequence:

TAACCATTAACC

Flanking Amino Acid:

IGSLHHGLGCVLSLPHRRLV

Intron Amino Acid Position:

779

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.44

1.2

74.7

41.5

Major BPS

59.7

0.24

1.1

55.7

39.9

Major PPT

62.6

0.28

1.1

55.9

43.4

Minor 5ss

42.3

-0.9

3.2

60.3

44.3

Minor BPS

65.1

0.45

1.6

72.05

37.8

Associated Gene:

Gene:

IQSEC1

Ensembl Gene ID:

ENSAPLG00000013323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019377

3627094 - 3966361

339268

ENSAPLT00000039597

3627020 - 3966361

339342

ENSAPLT00000013887

3871313 - 3966023

94711

ENSAPLT00000035729

3830554 - 3966361

135808

ENSAPLT00000032308

3704318 - 3966361

262044

ENSAPLT00000031035

3628053 - 3966023

337971

ENSAPLT00000043342

3899091 - 3966361

67271