About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3948668_3950683_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3948668 - 3950683
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGATAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTGCTGATTT
Flanking Amino Acid:
EIFLFNDLLVVTKIFQKKKN
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.1
0.5
1
67.2
43.5
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
53.9
0.2
2.1
80.66
41.5

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019377
3627094 - 3966361
339268
ENSAPLT00000039597
3627020 - 3966361
339342
ENSAPLT00000018841
3627094 - 3966361
339268
ENSAPLT00000035729
3830554 - 3966361
135808
ENSAPLT00000013887
3871313 - 3966023
94711
ENSAPLT00000032308
3704318 - 3966361
262044
ENSAPLT00000031035
3628053 - 3966023
337971
ENSAPLT00000043342
3899091 - 3966361
67271