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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3950784_3955282_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3950784 - 3955282
Intron Length:
4499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTATTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTCTTCACT
Flanking Amino Acid:
GMQVLLFENQYYPNGIRLTS
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.7
41.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.8
0.69
0.8
73.7
36.7
Minor 5ss
42.1
-0.9
3.1
60.2
44.1
Minor BPS
78.1
0.97
1.6
95.32
31.5

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031035
3628053 - 3966023
337971
ENSAPLT00000043342
3899091 - 3966361
67271
ENSAPLT00000019377
3627094 - 3966361
339268
ENSAPLT00000039597
3627020 - 3966361
339342
ENSAPLT00000018841
3627094 - 3966361
339268
ENSAPLT00000035729
3830554 - 3966361
135808
ENSAPLT00000013887
3871313 - 3966023
94711
ENSAPLT00000032308
3704318 - 3966361
262044