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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3955445_3956697_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3955445 - 3956697
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TAACTATGAATT
Flanking Amino Acid:
VQEMEKHRIESELEKQKGVV
Intron Amino Acid Position:
908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
71.6
0.54
1
72
33.1
Major PPT
89.3
0.88
0.8
87.9
29.4
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
48.6
-0
1.7
65.85
38

Associated Gene:

Gene:
IQSEC1
Ensembl Gene ID:
ENSAPLG00000013323
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018841
3627094 - 3966361
339268
ENSAPLT00000035729
3830554 - 3966361
135808
ENSAPLT00000013887
3871313 - 3966023
94711
ENSAPLT00000032308
3704318 - 3966361
262044
ENSAPLT00000031035
3628053 - 3966023
337971
ENSAPLT00000043342
3899091 - 3966361
67271
ENSAPLT00000019377
3627094 - 3966361
339268
ENSAPLT00000039597
3627020 - 3966361
339342