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Intron Name: Anas_platyrhynchos_platyrhynchos_13_3956875_3964054_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3956875 - 3964054

Intron Length:

7180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

ATGTCCTGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

GAGTCTCTAATC

Flanking Amino Acid:

SSSLRDLSEAGKRGRRSSAG

Intron Amino Acid Position:

967

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

84.4

33.5

Major BPS

82.2

0.8

0.9

81.6

Major PPT

0.27

1.1

58.4

42.5

Minor 5ss

-0.9

2.9

58.6

45.7

Minor BPS

54.1

0.11

1.7

60.91

38.5

Associated Gene:

Gene:

IQSEC1

Ensembl Gene ID:

ENSAPLG00000013323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031035

3628053 - 3966023

337971

ENSAPLT00000043342

3899091 - 3966361

67271

ENSAPLT00000019377

3627094 - 3966361

339268

ENSAPLT00000039597

3627020 - 3966361

339342

ENSAPLT00000018841

3627094 - 3966361

339268

ENSAPLT00000035729

3830554 - 3966361

135808

ENSAPLT00000013887

3871313 - 3966023

94711

ENSAPLT00000032308

3704318 - 3966361

262044