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Intron Name: Anas_platyrhynchos_platyrhynchos_13_3964105_3965417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3964105 - 3965417

Intron Length:

1313

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

AATTTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATT

Flanking Amino Acid:

SAGSLDSNMEGSIISSPHMR

Intron Amino Acid Position:

984

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.5

40.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

80.6

0.69

0.8

78.4

35.1

Minor 5ss

36.8

-1.5

2.7

42.8

38.2

Minor BPS

80.4

1.03

0.9

89.47

28.1

Associated Gene:

Gene:

IQSEC1

Ensembl Gene ID:

ENSAPLG00000013323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031035

3628053 - 3966023

337971

ENSAPLT00000043342

3899091 - 3966361

67271

ENSAPLT00000019377

3627094 - 3966361

339268

ENSAPLT00000039597

3627020 - 3966361

339342

ENSAPLT00000018841

3627094 - 3966361

339268

ENSAPLT00000035729

3830554 - 3966361

135808

ENSAPLT00000013887

3871313 - 3966023

94711

ENSAPLT00000032308

3704318 - 3966361

262044