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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3978701_3981147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3978701 - 3981147
Intron Length:
2447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
TCTGTATCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGGTTTTTAAAT
Flanking Amino Acid:
GPVEKFFTEEVDSKKIDQDA
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
0.9
73.8
35.8
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
62.4
0.47
1.4
71.81
39.1

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733
ENSAPLT00000044271
3977437 - 3998169
20733