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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3981250_3983800_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3981250 - 3983800
Intron Length:
2551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACATCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CTGCTTAGAACA
Flanking Amino Acid:
LFGMQIPEEYGGLGLSNTMY
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
71.4
0.48
1
61.7
43.7
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
45.2
-0.3
1.7
53.88
38.6

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733
ENSAPLT00000044271
3977437 - 3998169
20733