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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3983908_3985229_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3983908 - 3985229
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTC
5'SS Class:
major
3'SS Sequence:
ATTAATTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATT
Flanking Amino Acid:
LAAHQAIGLKGILIAGTDEQ
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
67.2
39.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69
0.43
1
66.7
44.1
Minor 5ss
39.3
-1.2
3.7
57.8
47.2
Minor BPS
69.3
0.68
1.5
86.39
32.9

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044271
3977437 - 3998169
20733
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733