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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3985331_3986441_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3985331 - 3986441
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTT
5'SS Class:
major
3'SS Sequence:
GTTTGGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ATTTCTTTAAAC
Flanking Amino Acid:
IAAFCLTEPGSGSDAASIQT
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69.9
40.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
74
0.54
0.9
70.2
41.3
Minor 5ss
34.2
-1.8
3.9
55.6
48.6
Minor BPS
77.7
0.85
1.2
82.16
30.9

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733
ENSAPLT00000044271
3977437 - 3998169
20733