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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3986521_3987378_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3986521 - 3987378
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCACT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTCTCTCAAAA
Flanking Amino Acid:
GKHFLLNGSKVWISNGGLAS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
68
42.9
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
67.7
0.4
1
63.3
36
Minor 5ss
62.8
0.43
2
76.3
38.9
Minor BPS
61.2
0.35
1.6
74.5
36.4

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014117
3977437 - 3998169
20733
ENSAPLT00000044271
3977437 - 3998169
20733
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191