About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3988209_3989682_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3988209 - 3989682
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
VIGEVGGGFKVAMNILNSGR
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733