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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3988209_3990894_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3988209 - 3990894
Intron Length:
2686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CACTATTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AATGTATAAACC
Flanking Amino Acid:
VIGEVGGGFKEKFCFMAVKA
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
68.8
0.42
1
64
41.1
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
46.8
-0.2
1.9
58.54
40.2

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044271
3977437 - 3998169
20733