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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3991794_3993064_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3991794 - 3993064
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTCTCTTACA
Flanking Amino Acid:
RDTRILLIFEGTNEILRLYI
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
90.9
28.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
29
-2.4
3.8
41.5
45.1
Minor BPS
56
0.18
2
73.03
38.3

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044271
3977437 - 3998169
20733
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733