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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3995622_3996427_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3995622 - 3996427
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGTA
5'SS Class:
major
3'SS Sequence:
TTTATTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTATTC
Flanking Amino Acid:
VRGLLSRFGKTIVDEQLVLK
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
67.8
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
45.6
-0.5
3.2
64.6
46.8
Minor BPS
55.3
0.14
1.5
61.83
38.6

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000044271
3977437 - 3998169
20733