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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3996536_3997377_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
3996536 - 3997377
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CGTGATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTACACTTACTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
72.5
0.51
0.9
68.8
41.7
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
50
0.08
1.8
68.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959