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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_3997699_3998068_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3997699 - 3998068
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTCT
5'SS Class:
major
3'SS Sequence:
TGATTTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTGTACTTAAGT
Flanking Amino Acid:
NNYTMAQLQKYAEENLDDCI
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74.4
36.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.8
0.54
0.9
69.3
36.8
Minor 5ss
48.9
-0.1
2.8
70.6
39.6
Minor BPS
61
0.42
1.9
76.54
45.9

Associated Gene:

Gene:
ACAD9
Ensembl Gene ID:
ENSAPLG00000013493
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038392
3977437 - 3998169
20733
ENSAPLT00000030577
3976979 - 3998169
21191
ENSAPLT00000014117
3977437 - 3998169
20733
ENSAPLT00000044271
3977437 - 3998169
20733