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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4000465_4001781_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4000465 - 4001781
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATCC
Flanking Amino Acid:
SLRKPGLILKPIPALSVLDN
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.3
0.68
0.8
74.2
35.2
Minor 5ss
30.3
-2.3
3.7
46.8
48.5
Minor BPS
70.8
0.63
1.6
78.75
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018255
3997378 - 4106628
109251
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959