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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4003221_4004763_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4003221 - 4004763
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
AAATTTAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCAAATTTAATT
Flanking Amino Acid:
DEARLEELSQKWQANVLYAN
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
77.8
33.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.7
0.31
1
61
43.8
Minor 5ss
47.1
-0.3
2.9
65.1
46.1
Minor BPS
57.9
0.33
1.5
70.31
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088