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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4004977_4005666_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4004977 - 4005666
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAA
U12 Branch Point Sequence:
CAAAACAAACCT
Flanking Amino Acid:
KKHLRQEMAKEPKNRFTYCP
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
64.4
38.3
Major BPS
48.1
-0.1
0.9
53.4
30.8
Major PPT
85
0.79
0.8
84.9
29.9
Minor 5ss
37.1
-1.5
3.1
47.1
48.3
Minor BPS
36.2
-0.9
2
48.79
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251