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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4007987_4011135_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4007987 - 4011135
Intron Length:
3149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTTTGTAAACT
Flanking Amino Acid:
ISWACFQALSRLSYLCQCKR
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.3
0.64
0.9
73.1
37.2
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
55.2
0.24
2.3
81.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251