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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4011331_4013075_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4011331 - 4013075
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TACTCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
ATGGATTTAACC
Flanking Amino Acid:
IKRLWDRHFERTYRHEDGQL
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
78.4
0.64
0.9
71.9
37.7
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
57.8
0.22
1.6
65.31
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251