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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4013963_4015552_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4013963 - 4015552
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAC
5'SS Class:
major
3'SS Sequence:
CTTTGTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTCTCCCTATTC
Flanking Amino Acid:
NTPVPIEVLQRLCVPTYCKY
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.1
34.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
82.8
0.74
0.7
81.3
30.8
Minor 5ss
43.8
-0.7
2.9
59
45.7
Minor BPS
55.9
0.16
1.9
70.79
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088