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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4018337_4020464_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4018337 - 4020464
Intron Length:
2128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
CCTCCATTAACA
Flanking Amino Acid:
YQADKIAVVNGRKGSAAKED
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
70.8
0.47
0.9
65.3
33.8
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
63.3
0.41
1.7
70.02
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959
ENSAPLT00000018255
3997378 - 4106628
109251
ENSAPLT00000014490
3997432 - 4142519
145088
ENSAPLT00000046370
3997432 - 4142519
145088