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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4025559_4027549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4025559 - 4027549
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGAG
5'SS Class:
major
3'SS Sequence:
TTTAATTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TACTTATTAACA
Flanking Amino Acid:
QKESSALPVKEETDWDEAGT
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
67.4
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.9
72.9
37.1
Minor 5ss
37.5
-1.4
3.2
48.2
47.9
Minor BPS
66.4
0.51
1.6
73.37
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018255
3997378 - 4106628
109251
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000036794
3996393 - 4033351
36959