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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4029298_4032659_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4029298 - 4032659
Intron Length:
3362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTTCTGTACT
Flanking Amino Acid:
AKLFAERDSKTIMPWFENDQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.7
0.76
0.7
80.1
32
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
60
0.4
1.8
80.33
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013916
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046370
3997432 - 4142519
145088
ENSAPLT00000039447
3996393 - 4033351
36959
ENSAPLT00000014490
3997432 - 4142519
145088