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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4038390_4070826_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4038390 - 4070826
Intron Length:
32437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTAAGATCTTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TGTGCCAGCACT
Flanking Amino Acid:
QQLESELQHYSSGAPGSENS
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
56.8
0.15
1
51.8
41.7
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
45.9
-0.2
2.2
70.75
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013971
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014546
4033291 - 4088604
55314