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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4076998_4077300_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4076998 - 4077300
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATATATACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
ILAKLPCCGSGCDEKLQKKL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
60.9
0.25
1
54.7
39.2
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013971
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014546
4033291 - 4088604
55314