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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4083527_4086824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4083527 - 4086824
Intron Length:
3298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGACAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGCCATAATA
Flanking Amino Acid:
LQLLQQLRDLNISKRALGKI
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
62.3
37.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.6
0.69
1
83.1
32
Minor 5ss
37.5
-1.4
3
44.2
44.6
Minor BPS
62.1
0.38
1.7
73.11
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013971
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014546
4033291 - 4088604
55314